|MetaPath - Comparative Analysis of Metabolic Pathways in Metagenomics|
One major and chalenging goal in metagenomics is to identify specific functional adaptations (signatures) of microbial communities to their habitats. Here we describe a powerful analytical method - MetaPath that can identify differentially abundant metabolic pathways in metagenomic datasets, relying on a combination of metagenomic sequence data and prior metabolic pathway knowledge (from KEGG).
The program is implemented in Perl. Download metaPathV0.83.tar.gz
In progress ...
Liu B, Pop M: Identifying Differentially Abundant Metabolic Pathways in Metagenomic Datasets. Lect Notes Comput Sci 2010, 6053: 101-112
- MetaPhyler: Estimate Bacterial Composition from Metagenomic Sequences
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Last Update: Jan 5, 2011